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bio_embeddings
bio_embeddings
  • Pipeline Examples
  • Pipeline Reference
  • Notebooks
  • Python API
    • bio_embeddings.embed
    • bio_embeddings.extract
    • bio_embeddings.mutagenesis
    • bio_embeddings.project
    • bio_embeddings.utilities
    • bio_embeddings.visualize
  • Contributing
    • Development Setup
    • Implement a new predictor
    • Add a new language model/embedder

Contributing¶

  • Development Setup
    • Tests
  • Implement a new predictor
    • Step 1: Class-to-label-mapping
      • Step 1.1.: Bridging imports
    • Step 2: Embedding-to-FeatureExtractor/Predictor-bridge
      • Step 2.1: File creation
      • Step 2.2: The meat of prediction
      • Step 2.2: Bridging imports
      • Step 3: Make your predictor part of the pipeline
      • Step 4: Add model weights
      • Step 5: Write tests
  • Add a new language model/embedder

You want to add your models to bio_embeddings? These guides will show you how.

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Development Setup
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bio_embeddings.visualize
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